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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggggcaacttcgctctatagttgcagctgttgtcataacttcatctttttaaagtctttattggttgattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCTATGGCTTATGTGTCTGGAAATCCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAA

Basic information

species Glycine max
transcript GLYMA17G14240.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G14240.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G22890.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------gtatggggc--aacttcgctctatagttgcagctgttgtcataacttcatctttttaaagtctttattggttgattg---tacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCTATGGCTTATGTGTCTGGAAATCCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAA
            |||||| |  || |||  |   | |||     || | || |   | ||   |  ||||   |||||||||    ||    |||||||| ||||| |||| |||| |||||||||| ||||||||||| ||||||||||||||  ||| |||  |||| | |||| || | ||||| |  |||||
gtaatcatcaactatgggactaaatttcatttctttgtt----ttggtttctttggtgcaaagtcctaaatcttttattggtaatatgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAA

upper sequence: GLYMA17G14240.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G11960.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatggggcaacttcgctctatagttgc-------agctgttgtcataacttcatctttttaaagtc---tttattggttgattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCTATGGCTTATGTGTCTGGAAATCCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAA
|||  |  ||  |  | | |||||||         | |  ||  | ||  ||| |  || |  |      |||||   |  |||||  |||||||||||| |||| |||||| |||||||| ||||||||||| ||||||||||||||  |||||||  |||||| |||| || | ||| |||  |||||
gtaatgaacacttatgatttatagttttgtcaataatccattcgcctaggttcttgattcttgatctaattttatctatgtattgt--agGTTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagctgttgtcataacttcatctttttaaagtctttattggttgattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCTATGGCTTATGTGTCTGGAAATCCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAA
                        tttttaaagtctttat  TA-rich tract