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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtcaggcttttttctcgttacattactttccaagaactgaaatataagactgctatatttacgtataaaaaagactgaaatataagactgctatatttgcatatctgaaacttggtctctggtgcagAAAATTCAGGTTTGCATGTCTTTGACTTCTTAGCCAATTCAATCCTTAAGGAGGTTCTCTCTGCAATTCAGAAGGGAAAGCCAGGTGCATTTTCTCCCGG

Basic information

species Glycine max
transcript GLYMA17G13840.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13840.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g01560.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttgtcaggcttttttctcgttacattactttccaagaactgaaatataagactgctatatttacgtataaaaaagactgaaatataagactgctatatttgcatatc-tgaaacttggtctctggtgcagAAAATTCAGGTTTGCATGTCTTTGACTTCTTAGCCAATTCAATCCTTAAGGAGGTTCTCTCTGCAATTCAGAAGGGAAAGCCAGGTGCATTTTCTCCCGG
                             ||  | ||||  |      ||||     || |||  || |  |||     | |||     |   | | |   |||   || |  ||   |||| | |   || |||||||||||||| | ||||| ||| ||||| | |||||||||||||| || || |||||| | ||||| ||||||||||| |||||  | |||||||||||
-----------------------------tttttatccagtattatgcatatggtcatgttattgtttctcatatt---gcctgtttctttgaatttc---attaaaattttatggtgcttgctgtggtgttcagAAAATTCAGGTCTACATGTGTTTAACTTCCTGGCCAATTCAATCCTCAAAGAAGTTCTCACAGCAATCCAGAAGGGAAAACCAGGCACTTTTTCTCCCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193588058|gb|FK541763.1|FK541763
EST:     GGAGTTCATTGATAAAGACTGTAAATTTTTATTGGAAATTTCTTCAGCTG                         AAAATTCAGGTTTGCATGTCTTTGACTTCTTAGCCAATTCAATCCTTAAGG
genomic: GGAGTTCATTGATAAAGACTGTAAATTTTTATTGGAAATTTCTTCAGCTGgtatgttgtc ... tctggtgcagAAAATTCAGGTTTGCATGTCTTTGACTTCTTAGCCAATTCAATCCTTAAGG
EST: gi|207683354|gb|GD665991.1|GD665991
EST:     GGAGTTCATTGATAAAGACTGTAAATTTTTATTGGAAATTTCTTCAGCTG                         AAAATTCAGGTTTGCA
genomic: GGAGTTCATTGATAAAGACTGTAAATTTTTATTGGAAATTTCTTCAGCTGgtatgttgtc ... tctggtgcagAAAATTCAGGTTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactgaaatataagactgctatatttgcatatctgaaacttggtctctggtgcagAAAATTCAGGTTTGCATGTCTTTGACTTCTTAGCCAATTCAATCCTTAAGGAGGTTCTCTCTGCAATTCAGAAGGGAAAGCCAGGTGCATTTTCTCCCGG
                                           tctct  CT-rich tract
     aaatataaga  TA-rich tract