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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttgtgctttgttctgtgcgtgtatgtcctccaaattgtcttcgtttttttcttttatgagcattatgttttgccctttgttattctgcagACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACTTGGCTTTATCTACTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTTAGGA

Basic information

species Glycine max
transcript GLYMA17G13560.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13560.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G24790.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtgttgtgctttgttctgtgcgtgtatgtcctccaaattgtcttcgtttttttcttttatgagcattatgttttgccctttgttattctgcagACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACTTGGCTTTATCTACTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTTAGGA
|||||| ||   |||  ||||   | | | |||| |  |||   |      |||     |  | || ||  || | ||        | |||||||||| ||||||  ||||||||||||||||||||||| |||| ||  | ||  | ||| |||| |||||||| || |||||||| ||  |||||||| | ||  
gtaagt-ttacacttctttctt--catatttgtcttggaaacattagatagtttagaagtgaaagatcaacatttctt--------tgattctgcagATTGGGGTTGTTTCTGATGATGAATTGCTTGATCTGCTTGATCTTGCCATGTCTTCTGATACTTCAAACACGGTTATAAGGGCGAGGGAACTTATGAGAT

upper sequence: GLYMA17G13560.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g09820.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtgttgtgctttgttctgtgcgtgtatgtcctccaaattgtcttcgtttttttcttttatgagcattatgttttgccctttgttat---tctgcagACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACTTGGCTTTATCTACTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTTAGGA
             |  ||| | |   ||| |||  |  ||    |||      | | | |  |  ||    ||  ||  || |||  |||   | |||||| |||  |  ||||||||||||| ||||||||||| |||||  | ||||| ||  ||||||| ||||||||||||| ||| ||| ||||| |  | ||  
------------gtaagttttatctttgtttgtt-tataatgcatctcg---ctctccataaaaaagtgacataattatccttttaatatgtctatgcagATTGGAATTGTTTCTGATGATGAGTTGCTTGATTTACTGGATCTAGCTTTGTCATCTGACACCTCAAATACAGTTAGAAGGGCCAGGGAATTGATGAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttcgtttttttcttttatgagcattatgttttgccctttgttattctgcagACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACTTGGCTTTATCTACTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTTAGGA
                                ttttgccctttgtt  CT-rich tract
        tttttttcttttatga  TA-rich tract