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...gtctataaatgaaagacttttggggcaatagaagacttaaattctgtaatgacatttatgcaaaatctccaattatactaatgcatttgttcttgcacagATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAG
species | Glycine max |
transcript | GLYMA17G13040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATG ATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAAEST: gi|6070502|gb|AW099889.1|AW099889
genomic: GCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATGgtatgctttc ... tcttgcacagATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAA
EST: GCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATG ATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAAEST: gi|192294212|gb|FG986301.1|FG986301
genomic: GCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATGgtatgctttc ... tcttgcacagATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAA
EST: GCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATG ATCTTGGTTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAAEST: gi|26047655|gb|CA784372.1|CA784372
genomic: GCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATGgtatgctttc ... tcttgcacagATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAA
EST: GCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATG ATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAA
genomic: GCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATGgtatgctttc ... tcttgcacagATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAA
gtaatgacatttatgcaaaatctccaattatactaatgcatttgttcttgcacagATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAG
tactaat putative branch site (score: 1)
tttgttctt putative PPT
aattatactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctataaatgaaagacttttggggcaatagaagacttaaattctgtaatgacatttatgcaaaatctccaattatactaatgcatttgttcttgcacagATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAG
- - - - - gaaagac
- - - - - - - - - tttgggg
- - - - - - - - - - - - - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt