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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaacaaggaatatagatacaagtgatttggctacgcattgataaatatcacaatggcacaagttgaatcatttttacataccttatttctatctttcagGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGT

Basic information

species Glycine max
transcript GLYMA17G11330.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11330.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0118g00800.t01 (Vitis vinifera), 3'ss of exon 3
agaacaaggaatatagatacaagtgatttggctacgcattgataaatatcacaatggcacaagt-tgaatcatttttacataccttatttctatctttcagGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGT
                                || ||||  || ||| |||   |    |   | ||||||   |    |||  | |  ||    |||||||| |||||||| |||||||||||||| ||||| ||||||||  | |||||| |||| || || || || || ||||| || ||||| |||||||| ||||
-------------------------------gtaagcatacatcaatttcattgtattgcttatatgaatccaataaggataa-tcaaatccggttttcagGGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGAAGAGCTGGAAAACTACCTGGTGACACTACCTCCCTCTTGAAAGCCTGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6847222|gb|AW349512.1|AW349512
EST:     GATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAG                         GGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGA
genomic: GATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGgtaactaata ... tatctttcagGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGA
EST: gi|15287510|gb|BI471401.1|BI471401
EST:     GATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAG                         GGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGA
genomic: GATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGgtaactaata ... tatctttcagGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGA
EST: gi|254341374|gb|GR855102.1|GR855102
EST:     GATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAG                         GGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGA
genomic: GATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGgtaactaata ... tatctttcagGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcacaatggcacaagttgaatcatttttacataccttatttctatctttcagGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGT
                                    ccttatttctatcttt  CT-rich tract
                     aatcatttttacata  TA-rich tract