1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatgaattttagctttttaaaaaattaagctgtgatttcattcaaagcatttgaccataaagcattttcattttgaaaccagTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAG
species | Glycine max |
transcript | GLYMA17G11020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGG TTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGEST: gi|14011015|gb|BG725937.1|BG725937
genomic: ATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGgtaaatgaat ... ttgaaaccagTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGG
EST: CAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGG TTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGEST: gi|192327128|gb|FK015520.1|FK015520
genomic: CAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGgtaaatgaat ... ttgaaaccagTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGG
EST: ATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGG TTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGG
genomic: ATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGgtaaatgaat ... ttgaaaccagTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGG
agctgtgatttcattcaaagcatttgaccataaagcattttcattttgaaaccagTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAG
atttgac putative branch site (score: 4)
ttttcatttt putative PPT
attttcattttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgaattttagctttttaaaaaattaagctgtgatttcattcaaagcatttgaccataaagcattttcattttgaaaccagTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT