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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagtgttattttttgtgatactgttcactgcgttctgagatttaagggctttgtacatttgtttagggtcatgtgtttgctttttttttttttcgtttataaattctaacatttactcttattttatttttagTTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACG

Basic information

species Glycine max
transcript GLYMA17G08660.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G08660.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g07440.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtagtgttattttttgtgatactgttcactgcgttctgagatttaagggctttgtacatttgtttagggtcatgtgt-ttgctttttttttttttcgtttataaattctaacatttactcttattttatttttagTTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACG
                                       || | | || | |   || |    ||     |   ||| | | ||  ||||| |  || |      | |    | |  ||   |||| | |  |  | |||  ||||||||||||||||||||| |||||  | || || | ||||||||||||||| || ||||| || || || ||||| ||||| ||  |  |||| 
--------------------------------------actaaaaattgatgctattattacattacactgttacatatttattaatttttctgcttgtgagacttgaccaatgaagttctatctt-tctcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310983|gb|FK000374.1|FK000374
EST:     AAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAA                         TTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGT
genomic: AAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAAgtgagtagtg ... ttatttttagTTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttttttttttttcgtttataaattctaacatttactcttattttatttttagTTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACG
                         ttctaac  putative branch site (score: 1)
                                     ctcttattttattttt  putative PPT
                 tttataaattctaaca  TA-rich tract