Sequence
atgc intronic sequence ATGC exonic sequencegttcatatgacactttgaatgtatatgatatgtgattattgttcctagttctgtagttgcttggggtgcagttggccagtttcatatctgtgagggaattttgtttctctaaaattgatcagtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTTTCACTGCTAAAATATTAAATGCCGAGCAATGTGCTGAATTAAAAATGGG
Basic information
species | Glycine max |
transcript | GLYMA17G08150.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G19350.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g55140.1 (Oryza sativa), 3'ss of exon 3
gttcatatgacactttgaatgtatatgatatgtgattattgttcctagttctgtagttgcttggggtgcagttggccagtttcatatctgtgagggaattttgtttctctaaaattgatcagtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTTTCACTGCTAAAATATTAAATGCCGAGCAATGTGCTGAATTAAAAATGGG
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------------------------------------------gtatatttcttttgttaaacgccaaacagtggatctcctccata-----gatgccattctgatgttttcttatt--tcactactcactcatctcctttatccagCTGTGCTTGCCGAGGAGGCATCAAACATTGCTTCTACATACAGTGATGTATTCACTGCGACAATATTAGATGTGGAGAAATGTAAAGAGTTAAAGATGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4396611|gb|AI495608.1|AI495608EST: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAG GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagggaattttgtttctctaaaattgatcagtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTTTCACTGCTAAAATATTAAATGCCGAGCAATGTGCTGAATTAAAAATGGG
tttacctc CT-rich tract
aattttgttt TA-rich tract