Sequence
atgc intronic sequence ATGC exonic sequencegttccgtactatactgtacttgggctcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcagCCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA
Basic information
species | Glycine max |
transcript | GLYMA17G07800.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07800.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G30510.1 (Arabidopsis thaliana), 3'ss of exon 3
gttccgtactatactgtacttgggctcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcagCCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA
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-gtttgtgct-tgataaacattattcgataatcagatttgatctttgt-ttgattaa---ggaaaatttcatatatatagGCTTCTCTATCCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTACCTCTTAGGGAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGA
upper sequence: GLYMA17G07800.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0037g00970.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------------------gttccgtactatactgtacttgggctcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcagCCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA
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gtgcttggtggtctactgatttgttgtgctagatggtgtagcccttttattaaaagtacattttcctactaacttctcttagtttctgattg---atcatttaccatggttccatctgactccacagCCATCTTTATCCCCACGCCGTCTCTGTTTGTTCAACACTACAACTGGAGCTGCCCTCCGAGAACTAAATTTTTTAACTTCTGTCCTTGCCATTCGTCTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192295874|gb|FG990898.1|FG990898EST: AGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAG CCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
genomic: AGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAGgttccgtact ... gcacatgcagCCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcagCCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA
gactgat putative branch site (score: 3)
tattgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttccgtactatactgtacttgggctcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcagCCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT