Sequence
atgc intronic sequence ATGC exonic sequencegttcgttagatgatcggttcgcttcaacttgttttgaaattgcattgtttctgaatgttgatcgtttttttttttttttttttatctttcttatgtgtattggattagGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTT
Basic information
species | Glycine max |
transcript | GLYMA17G07760.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07760.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G23890.1 (Arabidopsis thaliana), 3'ss of exon 2
gttcgttagatgatcggttcgcttcaacttgttttgaaattgcattgtttctgaatgttgatcgtttttttttttttttttttatctttcttatgtgtattggat-tagGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTT
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---------------------------------gtgaggtattatttgctattgattttggt--tttgtgattgttcttcttagtcactgatgatgatactttgtgtagGGATATATGTGAATAAGAATCTGAGATTGGATAATATACAAGTTTATGGATTTGATTATGATTACACTTTGGCACATTACTCTTCTCACTTACAGAGTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213590441|gb|DB971897.1|DB971897EST: TCTCAGTATTCCCGATGCGCTCCGGGAAATGCCCAAAATGAATCCTAAAG GCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGT
genomic: TCTCAGTATTCCCGATGCGCTCCGGGAAATGCCCAAAATGAATCCTAAAGgttcgttaga ... attggattagGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgttgatcgtttttttttttttttttttatctttcttatgtgtattggattagGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTT
tgttgat putative branch site (score: 4)
tttttttttttttttt putative PPT
tttttttttttttttt TA-rich tract