1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgagtattgaactgatcccgttccgtctttcatgtgcattgttttttgcgccaatgtatgtagtatgcacattatgtgaatgatgctgttttgaaaaatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACG
species | Glycine max |
transcript | GLYMA17G07040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCC GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGAEST: gi|209709784|gb|BW674000.1|BW674000
genomic: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGA
EST: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCC GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGAEST: gi|208175443|gb|GD976838.1|GD976838
genomic: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGA
EST: CGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAAATGACCCC GTTTCAATTGCGAGGACTTGCAEST: gi|192323206|gb|FK016337.1|FK016337
genomic: CGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAA-TGACCCCgtgagtattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCA
EST: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCC GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGAEST: gi|298168870|gb|HO009800.1|HO009800
genomic: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGA
EST: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCC GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGAEST: gi|207689600|gb|GD671993.1|GD671993
genomic: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGA
EST: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCC GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTG
genomic: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTG
caatgtatgtagtatgcacattatgtgaatgatgctgttttgaaaaatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACG
ttttgaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattgaactgatcccgttccgtctttcatgtgcattgttttttgcgccaatgtatgtagtatgcacattatgtgaatgatgctgttttgaaaaatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG