1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagattctgaccgtgctttgctttgtttctttgcgtggcttttgtacctggggaattattgctgactcgtggggatcttttgctcattatgcggtttcagTTTACTTGG
species | Glycine max |
transcript | GLYMA17G07010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGGACAATAGTTGCAGAAGGGAAGGTCAAAGCAGGAAAGGAAGGCAAG TTTACTTGGEST: gi|7685789|gb|AW756437.1|AW756437
genomic: ATGGGACAATAGTTGCAGAAGGGAAGGTCAAAGCAGGAAAGGAAGGCAAGgtaataataa ... gcggtttcagTTTACTTGG
EST: ATGGGACAATAGTTGCAGAAGGGAAGGTCAAAGCAGGAAAGGAAGGCAAG TTTACTTGG
genomic: ATGGGACAATAGTTGCAGAAGGGAAGGTCAAAGCAGGAAAGGAAGGCAAGgtaataataa ... gcggtttcagTTTACTTGG
acctggggaattattgctgactcgtggggatcttttgctcattatgcggtttcagTTTACTTGG
tgctgac putative branch site (score: 2)
aattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagattctgaccgtgctttgctttgtttctttgcgtggcttttgtacctggggaattattgctgactcgtggggatcttttgctcattatgcggtttcagTTTACTTGG
- - ttctgac
- - - - - - -tgctttg
- - - - - - - - - - - - - - - - - gtggctt
- - - - - - - - - - - - - - - - - - - - - -gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggga