1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aagatctttggctagatgttaggcatatgtgatttccatattatgtgctcttcttgcgtcatctcaatcttgatgatctgcattattttgttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATAT
species | Glycine max |
transcript | GLYMA17G05530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGAGAAG TCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTEST: gi|193640436|gb|FK592779.1|FK592779
genomic: GGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
EST: CCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAG TCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTEST: gi|207682231|gb|GD665302.1|GD665302
genomic: CCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTEST: gi|14126550|gb|BG790988.1|BG790988
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAG TCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTEST: gi|208308905|gb|GE101633.1|GE101633
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
EST: CTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCEST: gi|7639266|gb|AW733592.1|AW733592
genomic: CTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAG TCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTEST: gi|193467443|gb|FK432556.1|FK432556
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCEST: gi|11274392|gb|BF324745.1|BF324745
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAG TCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCT
tgctcttcttgcgtcatctcaatcttgatgatctgcattattttgttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATAT
tcttgat putative branch site (score: 4)
ttttgtt putative PPT
attattttgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagatctttggctagatgttaggcatatgtgatttccatattatgtgctcttcttgcgtcatctcaatcttgatgatctgcattattttgttatttgcagTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - -ctttggc
- - - - - - - - - - - gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatta