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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttccttcccctccttaatagtccagttaattaactagcacctgtgcagctgtgctcaattgagtacacctttctctgaacttttacaataactacttaatcagGAAACACATCAAAAGGGCCAGAAAAGGATTATTCTTTAAAAGGTGATACAACAAATCGCTTATTTGGAATCTTTAATGCCATTGCCATCATTGCCACAAC

Basic information

species Glycine max
transcript GLYMA17G05380.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530658|gb|EH258791.1|EH258791
EST:     ACTATGCTTAGCCTATAGTGCCTGTGCTACTACAGCTTCCATATATATTG                         GAAACACATCAAAAGGGCCAGAAAAGGATTATTCTTTAAAAGGTGATACAA
genomic: ACTATGCTTAGCCTATAGTGCCTGTGCTACTACAGCTTCCATATATATTGgtatttcctt ... acttaatcagGAAACACATCAAAAGGGCCAGAAAAGGATTATTCTTTAAAAGGTGATACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgctcaattgagtacacctttctctgaacttttacaataactacttaatcagGAAACACATCAAAAGGGCCAGAAAAGGATTATTCTTTAAAAGGTGATACAACAAATCGCTTATTTGGAATCTTTAATGCCATTGCCATCATTGCCACAAC
                                     caataac  putative branch site (score: 2)
                             aacttttacaataa  TA-rich tract