1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagatttagaaaaaaaaatgtttttgtcctgctgaagctctatattttggcagtgttttgttgcatttcttgaatgctttgtttcacccgttggttttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGCTGTATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTG
species | Glycine max |
transcript | GLYMA17G04930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATG GAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGEST: gi|151411775|gb|EV281586.1|EV281586
genomic: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagattta ... ttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
EST: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATG GAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGEST: gi|208051675|gb|GD854752.1|GD854752
genomic: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagattta ... ttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
EST: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATG GAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGEST: gi|192309249|gb|FG999462.1|FG999462
genomic: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagattta ... ttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
EST: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATG GAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
genomic: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagattta ... ttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
agtgttttgttgcatttcttgaatgctttgtttcacccgttggttttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGCTGTATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTG
ttttttgt CT-rich tract
ttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatttagaaaaaaaaatgtttttgtcctgctgaagctctatattttggcagtgttttgttgcatttcttgaatgctttgtttcacccgttggttttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGCTGTATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG