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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgcatgctttcttgactctgatcaataagatgttcaaccagtccttatggcacttcttcatgctaaatagttcacttactatgcgtaactgttgtgaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTTCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG

Basic information

species Glycine max
transcript GLYMA17G04890.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04890.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 3'ss of exon 2
gtacgtgcatgctttcttgactctgatcaataagatgttcaaccagtccttatggcacttcttcatgctaaatagttcacttactatgcgtaactgttgtgaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTTCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
     | ||||||    | | |  ||  |||    | |        |  ||  || | ||        |  ||  |    ||    ||    | | |     |  |||||||||||||| ||||||||| | || || || ||||| ||||||||||||||||||   ||  | ||||| ||||| || |||||||| ||| ||||||
-cttttacatgctacaattatt--gaaaaatgtcttttcttttttttttttgcgggaatt----gaaatgtattttctgattgacctgttccattttcaattac-cagAAACTTATTGCTTATGACCATCTAGAAGGCGACCCTGGTTTAGAGGGTGGTAAAAATTCCCCTCTATTTACTGACATCCTGAACATGGTCTGCGGTTGTG

upper sequence: GLYMA17G04890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G167318_T01 (Zea mays), 3'ss of exon 2
gtacgtgcatgctttcttgactctgatcaataagatgttcaaccagtccttatggcacttcttcatgctaaatagttcacttactatgcgtaactgttgtgaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTTCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
 |     |||  |||  |       |   | || ||    ||  ||     ||| ||| ||||||  | |   | |    ||     |   || |  ||| |   |||||||||||||| ||||||||||| || || |||||||| ||||| ||||||||||||   ||| | ||||||||||| || |||||||| ||  |||| |
atcttaccatttttttcttgtataaaaatacaaaatacaaaattag-----atgacacatcttca-acaatccattctgattgagtcgttcaatttctgttac--cagAAACTTATTGCTTATGACCATTTAGAAGGCGATCCTGGTTTAGAAGGTGGTAAAAATTCCCCAATATTTACAGACATCCTGAACATGGTATGTGGTTGCG

upper sequence: GLYMA17G04890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G335287_T01 (Zea mays), 3'ss of exon 2
-gtacgtgcatgctttcttgactctgatcaataagatgttcaaccagtccttatggcacttcttcatgctaaatagttcacttactatgcgtaactgttgtgaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTTCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
  ||  |  || |   |||   | || |  |||| |    |  | |      ||| ||| || |||  | |   | |    ||    ||   || |  ||| |   |||||||||||||| ||||||||||| || || |||||||| ||||| |||||||||||    ||| | |||||||||||  | |||||||| ||  |||| |
aatatatctataccgcctt--ttttgttttataaaa----ccgcaatattagatgacacatcatca-acaatccattctgattgagttgttcaatttctgttac--cagAAACTTATTGCTTATGACCATTTAGAAGGCGATCCTGGTTTAGAAGGTGGTAAAAACTCCCCAATATTTACAGACATCTTGAACATGGTATGTGGTTGCG

upper sequence: GLYMA17G04890.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 4
gtacgtgcatgctt-tcttgactctgatcaataagatgttcaaccagtccttatggcacttcttcatgctaaatagttcacttactatgcgtaactgttgtgaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTTCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
  | || |||   | || ||| | || ||  | | || |  ||    | | | ||| |      || |    ||  || | ||| | |   ||| |    | | |||||||||| || || ||||| ||||| ||||| ||||||||  |||| ||||||| |||||  ||  |||||||||||||||| || ||||||||||||||||
-aatgtccatctatgtcgtgaatatgttct-tgaaatttataatgcatgcatgtggtaga----caag---gattattaatttattctatttaattccaataagtacagAAACTCATCGCATATGAGCATTTAGAGGGTGATCCTGGTCTAGATGGTGGTACAAATGCACCGCTGTTTACAGACATTCTGAATATGGTTTGCAGTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcacttcttcatgctaaatagttcacttactatgcgtaactgttgtgaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTTCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
               taaatagtt  TA-rich tract