1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gattcttaaaagtatgcaagtgttatgtaatgtcatgatcaggtggtacaacataaacaataactggtttcttagtagctctgtatcttgcattttgcagGCTGATGAGCGTGCCGTCTTGAAGCCTTTTAAGTGGCCTGAGAAGAAAGCTGATGCAATGAGAGAGGCTGCAGTTGAGTATCATGAGCTTAAAATGCTAG
species | Glycine max |
transcript | GLYMA17G04640.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGTCCTAAAGTTTGTTGATTGGCTTGATGTCAAATTATCATCATTG GCTGATGAGCGTGCCGTCTTGAAGCCTTTTAAGTGGCCTGAGAAGAAAGCTEST: gi|12774798|gb|BG239746.1|BG239746
genomic: AAGAGGTCCTAAAGTTTGTTGATTGGCTTGATGTCAAATTATCATCATTGgtatgtttct ... cattttgcagGCTGATGAGCGTGCCGTCTTGAAGCCTTTTAAGTGGCCTGAGAAGAAAGCT
EST: AAGAGGTCCTAAAGTTTGTTGATTGGCTTGATGTCAAATTATCATCATTG GCTGATGAGCGTGCCGTCTTGAAGCCTTTTAAGTGGCCTGAGAA
genomic: AAGAGGTCCTAAAGTTTGTTGATTGGCTTGATGTCAAATTATCATCATTGgtatgtttct ... cattttgcagGCTGATGAGCGTGCCGTCTTGAAGCCTTTTAAGTGGCCTGAGAA
gtacaacataaacaataactggtttcttagtagctctgtatcttgcattttgcagGCTGATGAGCGTGCCGTCTTGAAGCCTTTTAAGTGGCCTGAGAAGAAAGCTGATGCAATGAGAGAGGCTGCAGTTGAGTATCATGAGCTTAAAATGCTAG
caataac putative branch site (score: 2)
ataaacaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattcttaaaagtatgcaagtgttatgtaatgtcatgatcaggtggtacaacataaacaataactggtttcttagtagctctgtatcttgcattttgcagGCTGATGAGCGTGCCGTCTTGAAGCCTTTTAAGTGGCCTGAGAAGAAAGCTGATGCAATGAGAGAGGCTGCAGTTGAGTATCATGAGCTTAAAATGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - -gtatgca
- - - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - -catgatc
- - - - - - - - - - - - - - - - - - - - -ggtggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgta