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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagtgaaccaccataaaagcaagagttcaaggcaaacatttgcatattcttttttttatattgtttatctcctttttcgtaccagGTGGGACAGTTCATACAGTTAGTGGCAACTTTCTTTGGAGGTTTTGTTGTAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGTTATCTTGTATTC

Basic information

species Glycine max
transcript GLYMA17G04590.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04590.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g00890.t01 (Vitis vinifera), 3'ss of exon 3
---------gtataagtgaaccaccataaaagcaaga-gttcaaggcaaacatttgcatattcttttttttatattgtttatctcctttttc-----gtaccagGTGGGACAGTTCATACAGTTAGTGGCAACTTTCTTTGGAGGTTTTGTTGTAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGTTATCTTGTATTC
          ||| |   ||   ||| |||    ||  |||  |  | |    |   | | |    |||   |     |||| ||  |  |       |  ||||| ||| |||| ||||||||  ||||||| ||||| ||||| ||| ||||||| |||  |||||| |||||||| ||  ||||||||||||| ||| |||
gtattgctgctatcatgaaaaagccagaaagaagagccgttttacaccattggtcttaaactggggtttaagttactcttatttcaatgattcaaatatttcagGTTGGAAAGTTTATACAGTTGATGGCAACATTCTTGGGAGGCTTTATTGTAGCTTTCTGCAAGGGGTGGCTTCTCACCCTTGTCATGTTATCATGTTTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcaaacatttgcatattcttttttttatattgtttatctcctttttcgtaccagGTGGGACAGTTCATACAGTTAGTGGCAACTTTCTTTGGAGGTTTTGTTGTAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGTTATCTTGTATTC
              tattcttttttttata  CT-rich tract
             atattcttttttttat  TA-rich tract