1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgcaaattattagtgtgacatttaccagcataccatgtaacagttctaaaatatcttcttttattctcattgaaattgagtcatgcaattttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGCAAGGCCG
species | Glycine max |
transcript | GLYMA17G04190.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTTGTTCCATTGTCTCAAATATCAACG AACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGEST: gi|209699735|gb|BW655774.1|BW655774
genomic: GGTTTGTTCCATTGTCTCAAATATCAACGgttagctctt ... ttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTG
EST: CTGAGTTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCTCAAATATCAACG AACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGEST: gi|120496890|gb|EH225057.1|EH225057
genomic: CTGAGTTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCTCAAATATCAACGgttagctctt ... ttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTG
EST: TTTGTTCCATTGTCTCAAATATCAACG AACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGEST: gi|209699736|gb|BW655775.1|BW655775
genomic: TTTGTTCCATTGTCTCAAATATCAACGgttagctctt ... ttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTG
EST: TGAGTT-GAAGGGGCTTAGAGGGTTTGTTCCATTGTCTCAAATATCAACG AACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGEST: gi|31561839|gb|CD487677.1|CD487677
genomic: TGAGTTGGAA-GGGCTTAGAGGGTTTGTTCCATTGTCTCAAATATCAACGgttagctctt ... ttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTG
EST: CTGAGTTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCTCAAATATCAACG AACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTG
genomic: CTGAGTTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCTCAAATATCAACGgttagctctt ... ttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTG
ctaaaatatcttcttttattctcattgaaattgagtcatgcaattttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGCAAGGCCG
ttctaaa putative branch site (score: 2)
ttttcttctc putative PPT
atatcttcttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaaattattagtgtgacatttaccagcataccatgtaacagttctaaaatatcttcttttattctcattgaaattgagtcatgcaattttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGCAAGGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - gtgtgac
- - - - - - - - - - - - - -gcatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca