1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtatctgaattgaattcatcagcatctaagattctaaatgcaaattgattttattgctttcttaactatttctatatggactttaaaccacattttacagGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCTGACCCATCTCTTTCAAGTAAATATTTCCTCCGCCAGAATTGGATGGATG
species | Glycine max |
transcript | GLYMA17G03880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTCCATGTTCATACCAAGACATATCTGGATGGTGCTATTTTAAAAGAA GAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCTEST: gi|298189397|gb|HO037800.1|HO037800
genomic: GTTTCCATGTTCATACCAAGACATATCTGGATGGTGCTATTTTAAAAGAAgtgggtgctg ... cattttacagGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCT
EST: GTTTCCATGTTCATACCAAGACATATCTGGATGGTGCTATTTTAAAAGAA GAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCTEST: gi|207694522|gb|GD678705.1|GD678705
genomic: GTTTCCATGTTCATACCAAGACATATCTGGATGGTGCTATTTTAAAAGAAgtgggtgctg ... cattttacagGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCT
EST: GTTTCCATGTTCATACCAAGACATATCTGGATGGTGCTATTT-AAAAGAA GAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGEST: gi|254348906|gb|GR852585.1|GR852585
genomic: GTTTCCATGTTCATACCAAGACATATCTGGATGGTGCTATTTTAAAAGAAgtgggtgctg ... cattttacagGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAG
EST: GTTTCCATGTTCATACCAAGACATATCTGGATGGTGCTATTTTAAAAGAA GAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCT
genomic: GTTTCCATGTTCATACCAAGACATATCTGGATGGTGCTATTTTAAAAGAAgtgggtgctg ... cattttacagGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCT
tgattttattgctttcttaactatttctatatggactttaaaccacattttacagGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCTGACCCATCTCTTTCAAGTAAATATTTCCTCCGCCAGAATTGGATGGATG
tcttaac putative branch site (score: 2)
ttaactatttctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctgaattgaattcatcagcatctaagattctaaatgcaaattgattttattgctttcttaactatttctatatggactttaaaccacattttacagGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCTGACCCATCTCTTTCAAGTAAATATTTCCTCCGCCAGAATTGGATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
gtatctg
- - - - - - - - catcagc
- - - - - - - - - - - - - - - - - - aatgcaa