1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttaaacttgttcgcttattgtttgtttaacctttgttgaatgctgtggaagagaagaagttgatacctagctataatcgtggtttgaaattgttgcactgtgaaatccagtgatcttgtaccttgcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAG
species | Glycine max |
transcript | GLYMA17G03010.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGGGTGCATGGTTAAACGATGAG GTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCAEST: gi|193542105|gb|FK496217.1|FK496217
genomic: CCGGGTGCATGGTTAAACGATGAGgttaaacttg ... gcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCA
EST: CCGGGTGCATGGTTAAACGATGAG GTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCAEST: gi|193315499|gb|FK280207.1|FK280207
genomic: CCGGGTGCATGGTTAAACGATGAGgttaaacttg ... gcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCA
EST: GACCGGGTGCATGGTTAAACGATGAG GTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCAEST: gi|208263872|gb|GE065280.1|GE065280
genomic: GACCGGGTGCATGGTTAAACGATGAGgttaaacttg ... gcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCA
EST: GACCGGGTGCATGGTTAAACGATGAG GTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCAEST: gi|208109757|gb|GD902603.1|GD902603
genomic: GACCGGGTGCATGGTTAAACGATGAGgttaaacttg ... gcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCA
EST: GACCGGGTGCATGGTTAAACGATGAG GTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCAEST: gi|208304240|gb|GE104769.1|GE104769
genomic: GACCGGGTGCATGGTTAAACGATGAGgttaaacttg ... gcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCA
EST: TGCATGGTTAAACGATGAG GTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCAEST: gi|193447403|gb|FK414606.1|FK414606
genomic: TGCATGGTTAAACGATGAGgttaaacttg ... gcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCA
EST: GACCGGGTGCATGGTTAAACGATGAG GTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCA
genomic: GACCGGGTGCATGGTTAAACGATGAGgttaaacttg ... gcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCA
tggtttgaaattgttgcactgtgaaatccagtgatcttgtaccttgcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAG
ccttgccttt CT-rich tract
aaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaacttgttcgcttattgtttgtttaacctttgttgaatgctgtggaagagaagaagttgatacctagctataatcgtggtttgaaattgttgcactgtgaaatccagtgatcttgtaccttgcctttgcagGTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAACCACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG