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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagtgggagattcttgctcagatttaactaattacttgcttgttgcttcatctcaacaaaactgggttttatccatttttactgtcagGTGCTGAATTTTGATAGATTTTCGTGGACCACCGCATCGTCAAAGCTTTACTTGTCTCCCAGCAGTCTGCCACTGAAAATTCCAGCGTGCAAGGGCCATA

Basic information

species Glycine max
transcript GLYMA17G02680.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02680.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 5
gtataagtgggagattcttgctcagatttaactaattacttgcttgttgc-ttcatctcaacaaaact----gggttttatccatttttactgt-----cagGTGCTGAATTTTGATAGATTTTCGTGGACCACCGCATCGTCAAAGCTTTACTTGTCTCCCAGCAGTCTGCCACTGAAAATTCCAGCGTGCAAGGGCCATA
  ||   |   || ||||||||    | |||  ||| | |   || || | ||  |   ||   ||      || || | |  || |||  | |     |||||||| ||||||||||||||| | |||| | |  | ||||||||| |||||||||| || | |||||| |||||||| || || || |||||||| ||||
--atttataatagtttcttgcttgcttataaaaaataaataaattctttcatttcttgtaatgtaatgctgaggattctgtatatcttttttctttgttcagGTGCTTAATTTTGATAGATTTACCTGGAGCGCTCCTTCGTCAAAGATTTACTTGTCACCTACCAGTCTACCACTGAAGATCCCTGCATGCAAGGGTCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgcttgttgcttcatctcaacaaaactgggttttatccatttttactgtcagGTGCTGAATTTTGATAGATTTTCGTGGACCACCGCATCGTCAAAGCTTTACTTGTCTCCCAGCAGTCTGCCACTGAAAATTCCAGCGTGCAAGGGCCATA
                                 ttttatccattttt  CT-rich tract
                                 ttttatccattttta  TA-rich tract