Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctttaaatgattaatttcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAGTATTGGAAAAAATTAAAGTTGCCACATGCTACCATTTTTAAGCCCCGAA

Basic information

species Glycine max
transcript GLYMA17G02580.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02580.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G873277_T01 (Zea mays), 3'ss of exon 3
gtaatctttaaatgattaatttcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAGTATTGGAAAAAATTAAAGTTGCCACATGCTACCATTTTTAAGCCCCGAA
                                    ||  | ||  ||  | ||  |   || | |    | |  |      ||| | |  | |  ||  | | | | | ||| |  |||| |||     | |      ||  |  |||||||| ||||| ||||| || |||||||| ||||| |||||  |||| || ||||||||||||| ||||||||| ||||| || || |||||||| | | 
-----------------------------------ttcagacagtttagtaggtcatatgttcagtcacaatttttat----tttcggtcattgctttccatgatattttctttt--tttgattgg---gtgtt-----tgtctttcagGTGGAACAGCTGCATAAAATTTTTAAGCTATGTGGCTCTCCGACTGAAGAATATTGGAAAAAATCAAAGTTGCCCCATGCAACTATATTTAAGCCTCAAC

upper sequence: GLYMA17G02580.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G333433_T01 (Zea mays), 3'ss of exon 3
gtaatctttaaatgattaatttcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAGTATTGGAAAAAATTAAAGTTGCCACATGCTACCATTTTTAAGCCCCGAA
                                            |||   |   ||   || |  ||||  |  ||     ||||  |   |  | ||  | | | | | | | || |||| |||   | | ||     ||  |   ||||||| ||||| ||||| || |||||||| ||||| |||||  | || || ||||||||||||| ||||||||| ||||| || || |||||||||| | 
----------------------------------------cagacatttcagtgatggtctatgtttgttcacagtttttaatttcatcaattcttttctatgatatttccatttg-tttgattg---tgtgtc-----tgtcttctagGTGGAACAGCTGCATAAAATTTTTAAGCTATGTGGCTCTCCGACAGAAGAATATTGGAAAAAATCAAAGTTGCCTCATGCAACTATATTTAAGCCCCAAC

upper sequence: GLYMA17G02580.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g01890.t01 (Vitis vinifera), 3'ss of exon 3
gtaatctttaaatgattaatttcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAGTATTGGAAAAAATTAAAGTTGCCACATGCTACCATTTTTAAGCCCCGAA
                                               | | | | || | ||| || |    | |||   ||     ||  |      |||       |||||||  |   | | | |  | ||   |||| | | ||||||||||||||||| |||||||||||||| ||||| ||||||||||| || || |||||||||| ||||||||| ||||| ||||| |||||||| | | 
-----------------------------------------------agggtttgttgaattttctaggtgtttgtggtggacccaatt-ttgaaacaagagtacagctgcttctattgctgctaaaaattttcttttgtg-tgctcagGTGGAGCAGCTACACAAGATATTTAAGCTATGTGGCTCTCCTTCTGAAGAATACTGGAAAAAATCAAAGTTGCCGCATGCAACCATATTTAAGCCTCAAC

upper sequence: GLYMA17G02580.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ35595 (Selaginella moellendorffii), 3'ss of exon 2
gtaatctttaaatgattaatttcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagatt-ttgttgctcgtgttagaaggtttgt--gcttctgatttggttgatatatatccactgtgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAGTATTGGAAAAAATTAAAGTTGCCACATGCTACCATTTTTAAGCCCCGAA
                                                                            | | | |  ||| |  | || |||  | ||||     |  |||  ||  ||  |||  ||| |         ||||||||||||  |||| ||||| |||||||| ||||| || || || || ||||||||||||||||  ||  | || || ||||| ||||||||||| |   
----------------------------------------------------------------------------gtatgctcgttggtttttgttttacgatgtttagtaacgcctgcctttcttcttattgatcga---------acagGTGGAGCAATTACACAAGATTTTTAAGCTATGTGGCTCGCCATCGGAAGAGTATTGGAAAAAATCCAAACTTCCTCACGCTACGATTTTTAAGCCGCAGC

upper sequence: GLYMA17G02580.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ24328 (Selaginella moellendorffii), 3'ss of exon 4
gtaatctttaaatgattaatttcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAGTATTGGAAAAAATTAAAGTTGCCACATGCTACCATTTTTAAGCCCCGAA
                                                                          ||       || |||  |  | |  || | || ||    |     |  ||  |||  ||| |         ||||||||||||  |||| ||||| |||||||| ||||| || || || || ||||||||||||||||  ||  | || || ||||| ||||||||||| |   
--------------------------------------------------------------------------gtatgctccttggtttttattttacgatgtttagtaacgcctgcct--ttcttattgatcga---------acagGTGGAGCAATTACACAAGATTTTTAAGCTATGTGGCTCGCCATCGGAAGAGTATTGGAAAAAATCCAAACTTCCTCACGCTACGATTTTTAAGCCGCAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845245|gb|BF068401.1|BF068401
EST:     TTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAG                         GTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAG
genomic: TTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAGgtaatcttta ... tgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAGTATTGGAAAAAATTAAAGTTGCCACATGCTACCATTTTTAAGCCCCGAA
                            ttgatatatat  TA-rich tract