Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agattaaccattgaactatattgatagtttactctgttatgttgaatacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT

Basic information

species Glycine max
transcript GLYMA17G02200.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 2
---------------------agattaac-cattgaactatattgatagtttactctgttatgttgaatacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
                     | |||      |  |||||||    |||   | |  ||  |  |  || ||  | | | ||  |  |||   |||  |     |   ||   ||| |||| ||||| | |||||| ||||| ||||| |||||||||||||||||  |||| || | |||||| ||||||||||| || ||  | || || ||||||    
gtacgtccgttccttcgctacacattcttgtttctaactatagatctagc--attgagtatttgtacatgcagtttgattctatat-tataatttaactagctttccctgtccattgtGCAATTTGGTTTTATTGTCTTGACCACCTCGGCTGGCATCATGGATCACAAAGAAGCCACGAGGAAGAATGTTGGTGGAAATGTGCTAGGTTTTTTCTAC----

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G39590.1 (Arabidopsis thaliana), 3'ss of exon 2
-----agattaaccattgaactatattgatagtttactctgttatgttgaatacaaatggttcctccacctatcccttacattttgatt---tatg-gta----attatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
     | | ||||||||    ||| || |||  |  ||  |     || |      || ||   |  | |  |     | ||| | |     |||| |||    |||  |||||||||||| |||||  |||| || || ||||| |||||||| |||||||||||||||| |||||||||||| || || ||  | || || ||||||||| 
gtaaaaaactaaccattcttttat-ttaataaatctctgagaccaattcatggtttattgtgt-ttgatcattgtgggatattctaacaaagtatgtgtaccaaattgagcagTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAAGAGGCTAGGAAGAAAAATGTTGGGGGCAAAGTGCTTGGTTTTTTCTACTAG-

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
------------------------------agattaaccattgaactatattgatagtttactctgtta--tgttgaatacaaatggttcctccacctatcccttacattt---tgatttatggtaattat--gcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
                                |  ||  |   ||  || || | | |  |||  |  |  ||       | |||  ||  ||      |    |   ||    ||| | |||     |||  ||||||||| |||||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||  | || ||||| |||||||
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
-agattaac--cattgaactatattgatagtttactctgttatgttga--atacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
 |  ||| |  |||   | | ||||    | |   | |  | ||   |  ||| |  ||||| |      |  || ||  ||  || |  |    ||   |||||||||| || |||||  ||||||| || |||||||||||||||||||| ||||||||||| || ||||||||||| || ||  | || |||||||||||| 
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttg-atgatggtcca----aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S41_94V6.2 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------------------------------------agat-taaccattgaactatattgatagtttactctgttatgttgaatacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
                                                                                       || | ||  |||    ||  |  || ||  || | ||   | |  || |   |||     |  | || ||||| || |   ||  |  |   | ||||||| || || ||||| ||||| || || ||||| ||||||||||| || || ||||||||||||||||| || || ||||| ||||| ||||| |||||||
gttattatttaccacctgtcatcgtggtctactcaatattattcaaaatcggtggtacaatgtggtgctgtggagatagcttaacgcatgtgacggttgcgtcatcctagtacttctctttttttcttcgtttagagtcggtggaatcttc-attccttatatgtattttatttttgcctgtgcagTTCGGATACATTGTTTTGACCACTTCGGCTGGAATCATGGATCACGACGAAGCTAGGAGGAAAAATGTCGGAGGCAAGGTTTTGGGATTCTTTTACTAGT

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S61_209V6.1 (Physcomitrella patens), 3'ss of exon 2
-----agattaaccat----tgaactatattga-tagtttactctgttatgttgaatacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
     |  ||| || |    || |  || | || |||| ||  |    | ||  ||  || |  ||||  |||  | ||  ||||  ||||   | |      | |||||||||| || ||||||||||| ||||| ||||| || |||||||| || ||||||||| | || || || || || ||||| || || |||||||| ||  
catgtaacttacccttctagtgcaggatttcgagtagtataaacgtacaagt--aaatcagaatgttcgacca--tgtcatttactgtttgtcctgt------tgtgcagTTTGGCTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCTAGGCGTAAGAACGTAGGAGGAAAGGTCTTAGGATTCTTCTATTAAG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S1_304V6.1 (Physcomitrella patens), 3'ss of exon 2
--agattaaccattgaactatattgatagtttactctgttat-gttgaatacaa--atggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
   ||| || | || | |    |  | ||  |    |||||  | ||  |  |   |||   |    | ||     ||   ||||   | ||  |  || |||||||||| || ||||| ||||| ||||| |||||||||||||| || || |||||||| ||||| |||||||| || |||||  | || ||||| ||||   
aacgatcaagcgttaatcctcctcaagaggatttcatgttaccgctgcttttaggtatgaacctgaaatctgattgttgagtttt---tcatctt--ttttgcagTTTGGATACATTGTTTTGACCACCTCAGCTGGCATCATGGACCACGACGAGGCTAGAAGGAAGAATGTTGGAGGAAAGGTCCTTGGTTTCTTTTACTGAG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ14550 (Selaginella moellendorffii), 3'ss of exon 2
agattaaccattgaactatattgatagtttactctgttatgttgaatacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
            |    || |||| ||   | ||  |   | |   | ||||    |     | | ||   || |  || ||| | |||        |||||||| || |||||  |||| || ||  | || ||||||||||| || || || |||||||| ||||||||||| |||||  | ||||||||||| |  |
------------gtttgattttgagagacgaatcgatg--gcttggtgcaaagaagt-----aacgat---tttctcttcgatctctggct------cagTTTGGTTACATTGTGCTGACAACATCGTCCGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ26253 (Selaginella moellendorffii), 3'ss of exon 2
agattaaccattgaactatattgatagtttactctgttatgttgaatacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
            |    || |||| ||   | ||  |   | |   | ||||          ||  |    || |  || ||| | |||        |||||||| || |||||  |||| || ||  |||| ||||||||||| || || || |||||||| ||||||||||| |||||  | ||||||||||| |  |
------------gtttgattttgagagacgaatcgatg--gcttggtgcaaaga--------actaacgattttctcttcgatctctggct------cagTTTGGCTACATTGTGCTGACAACATCGTCTGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207780890|gb|GD754673.1|GD754673
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|31308367|gb|CD393570.1|CD393570
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|18040254|gb|BM308548.1|BM308548
EST:     CGTCAAAGAGATTGAAGGTTGGACTGCTANGCTTCTCCCCCTCA-GACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGA
genomic: CGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCC-TCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGA
EST: gi|298175254|gb|HO018135.1|HO018135
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCAAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCACCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|7693041|gb|AW761139.1|AW761139
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|193570814|gb|FK529497.1|FK529497
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|151394155|gb|EV264026.1|EV264026
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|207775804|gb|GD748579.1|GD748579
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|151409518|gb|EV279326.1|EV279326
EST:     GCGTCAAGGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|58024827|gb|CX711568.1|CX711568
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|208238661|gb|GE037621.1|GE037621
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|192322409|gb|FK014890.1|FK014890
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|31464244|gb|CD406272.1|CD406272
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|31307432|gb|CD392635.1|CD392635
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|21602273|gb|BQ612613.1|BQ612613
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|193717612|gb|FK651694.1|FK651694
EST:     CGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: CGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTC-TCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|213589975|gb|DB981437.1|DB981437
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|31460475|gb|CD402443.1|CD402443
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|15286390|gb|BI470281.1|BI470281
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|192318303|gb|FK005807.1|FK005807
EST:     GCGTCAAAAAGATTGAAGGTTGGACTGCTGGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|26060150|gb|CA803064.1|CA803064
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|18730294|gb|BM525798.1|BM525798
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|151405179|gb|EV274993.1|EV274993
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|192294609|gb|FG986458.1|FG986458
EST:     GTCAAAGAGATTTGAAGGTTGGACTGCTAGGCTTCTCCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GTCAAAGAGA-TTGAAGGTTGGACTGCTAGGCTTCT-CCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|193636218|gb|FK583961.1|FK583961
EST:     TCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: TCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|58020591|gb|CX707333.1|CX707333
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|14259906|gb|BG882814.1|BG882814
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|298174142|gb|HO017478.1|HO017478
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|7590528|gb|AW706278.1|AW706278
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|209709269|gb|BW678688.1|BW678688
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|193344192|gb|FK313604.1|FK313604
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|162286176|gb|FC456624.1|FC456624
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         G
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcag-
EST: gi|162286176|gb|FC456624.1|FC456624
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         G
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcag-
EST: gi|4260098|gb|AI416594.1|AI416594
EST:     CGTCAAAAAGATTGAAGGTTGGACTG-TAGGCNTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAAAG
genomic: CGTCAAAGAGATTGAAGGTTGGACTGCTAGGC-TTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|7030189|gb|AW459972.1|AW459972
EST:     GCGTCAAATAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATAGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|213592123|gb|DB975245.1|DB975245
EST:     GATTGAAGGTTGGACTGCTACGCTTCTCCCGTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|298199356|gb|HO042719.1|HO042719
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCTCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|31469860|gb|CD411888.1|CD411888
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTTACCTCTGCCGGCATCATGGATCA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACT-ACCTCTGCTGGCATCATGGATCA
EST: gi|31472647|gb|CD414675.1|CD414675
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|18039835|gb|BM308129.1|BM308129
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|7685460|gb|AW756108.1|AW756108
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|7684785|gb|AW755433.1|AW755433
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|10255281|gb|BE823047.1|BE823047
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|193575998|gb|FK532143.1|FK532143
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTAT
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTAT
EST: gi|17021198|gb|BM092232.1|BM092232
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|16996844|gb|BM086216.1|BM086216
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|151396941|gb|EV266814.1|EV266814
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|193595617|gb|FK550492.1|FK550492
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCT
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCT
EST: gi|192324575|gb|FK016466.1|FK016466
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|208318988|gb|GE112029.1|GE112029
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|207832103|gb|GD805153.1|GD805153
EST:     TCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: TCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|6845790|gb|AW348080.1|AW348080
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|37996867|gb|CF808456.1|CF808456
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|192328798|gb|FK023228.1|FK023228
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|213590230|gb|DB963821.1|DB963821
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
EST: gi|192308383|gb|FK000907.1|FK000907
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaagttaaa ... aattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT
                              attttgatttatggta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agattaaccattgaactatattgatagtttactctgttatgttgaatacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - tgttatg