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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttagttttgtacctttgttgtgttgtatttgcctaatgattgtaaggttggtatgctcacatagatagagtggcttcttgtttgattagGTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAG

Basic information

species Glycine max
transcript GLYMA17G01820.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01820.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 3'ss of exon 3
------gttggttagttttgtacctttgttgtg----ttgtatttgcctaatgattgtaaggttggtatgctcacatagatagagtggcttcttgtttgattagGTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAG-------
        | | | ||     ||  || |  ||    |||||    |   |    |  ||||   || |||| |||   ||  | | || |||||    || ||||  |||||| |||  | || |||||||| ||||| || |||||||| ||||| ||||||||||| || || |||| ||| || |||||||||       
cactggaatagatggtaccacactgttttcctgcatcttgtagcatctacagtgctcaaaggcctgtttgctgaca-gcatgcatttgcatcttg---aatcagGTACTGATTTTGGTATTGTTGGATCTTCCTGGACTTCTGTTTTTCTCTACATACACACTTCTTGTGCTATTTTGGGCAGAGATATATCACCAGGCAAGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135976|gb|BU926486.1|BU926486
EST:     GTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAAG                         GTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACNNNNNNNCTCAACA
genomic: GTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAAGgttggttagt ... gtttgattagGTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgattgtaaggttggtatgctcacatagatagagtggcttcttgtttgattagGTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAG
                   tgctcac  putative branch site (score: 2)
                                       cttcttgttt  putative PPT
                                              tttgatta  TA-rich tract