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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatgtctgtagcttttgagtaatgatttttgggaggattttattttctcatcttctctatctcttgtctacagGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA

Basic information

species Glycine max
transcript GLYMA17G00740.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00740.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 3
gta-taatgtctgtagcttttga----gtaatg----atttttgggaggattttattt-tctcatcttctctatctcttgtctac-----agGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA
||| || | ||  ||| || |       |||      | || |   || |  |  ||| || ||  |   || | |||| | |||     |||| ||||     ||| | | ||| |||   |||||||| ||||||| ||||||  ||||||||||||| || || ||||||||||||
gtaatattttccctaggttctagtggtataacactgtacttataatagtacatactttctcacacttgtcctttttcttatttacttgttagGAGTGCAAGGTCACAAAGAAAGGTGGAGCTTATTATGAATTCTGGCGAAACACAAGATCTGTGAAATCGACCATCCTTCATTTCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193420877|gb|FK385830.1|FK385830
EST:     AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAGgtataatgtc ... ttgtctacagGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
EST: gi|209697566|gb|BW660573.1|BW660573
EST:     AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAGgtataatgtc ... ttgtctacagGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
EST: gi|254340112|gb|GR858237.1|GR858237
EST:     AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAGgtataatgtc ... ttgtctacagGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
EST: gi|151404558|gb|EV274372.1|EV274372
EST:     AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAGgtataatgtc ... ttgtctacagGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
EST: gi|213607081|gb|DB966986.1|DB966986
EST:     AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAGgtataatgtc ... ttgtctacagGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
EST: gi|192317031|gb|FK007826.1|FK007826
EST:     AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCGCAATCAGGCGAACAGTCAGAAAAGgtataatgtc ... ttgtctacagGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgatttttgggaggattttattttctcatcttctctatctcttgtctacagGAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA
                   ttttattttctcatct  CT-rich tract
                  attttattttctcat  TA-rich tract