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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacccactttcacaccacaattgttttagaaatatcatgtttctcatcctcttactcttttttcatttctttttatagGTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGCCGTGATGAAATATATCTCAAACTACGTACCAGTACTG

Basic information

species Glycine max
transcript GLYMA17G00480.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00480.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------------------------------------------gtaagacccactttcacaccacaattgttttagaaatatcatgtttctcatcctcttactcttttttcatttcttt---ttatagGTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGCCGTGATGAAATATATCTCAAACTACGTACCAGTACTG
                                                                                              |  |   || ||| | |     | ||  ||   | ||| |||  | | | | |    ||  ||||   |||   |   |||||||||| ||||| ||||||||||||||||| || || ||  ||||||| || | ||| ||||||||||||||||| || || || || ||||| |
gtaaggcctcttaccatagggcctataattttactttgctcccctaaaggttctccaccatcacatgttgatgtatatcaactgcatagatccattggtagcaatttaaaatgg--actgaattgttattatgatggctttaaccatgacccttgttttcttttttggtgtattatagGTGCTCTTCGGCATTCTCTACAGGATAGGCTTAGTAAGAGTTCATCAGGCAAGAGTCGTGATGAAATATATCTGAAGCTTCGCACTAGTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318683|gb|GR828627.1|GR828627
EST:     CAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAA                         GTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTA
genomic: CAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAAgtaagaccca ... ctttttatagGTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagaaatatcatgtttctcatcctcttactcttttttcatttctttttatagGTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGCCGTGATGAAATATATCTCAAACTACGTACCAGTACTG
                         ctcttac  putative branch site (score: 3)
           tcatgtttctcatcct  CT-rich tract
                                tcttttttcatttctt  TA-rich tract