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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatattatagacactgtttcttattccatgttttagggctttacatgagctaattcaataatgttcattttcgattatccttgtggattggaatttatatatatcaaggagtatgtggattattgtgattattttctttttgctgcagTTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATAT

Basic information

species Glycine max
transcript GLYMA17G00470.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699367|gb|BW664086.1|BW664086
EST:     GGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATG                         TTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAAT
genomic: GGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtaata ... tttgctgcagTTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAAT
EST: gi|208029666|gb|GD832044.1|GD832044
EST:     AAACCCCCGTATTGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATG                         TTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAAT
genomic: AAACCCCCG-A-TGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtaata ... tttgctgcagTTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAAT
EST: gi|12773474|gb|BG238401.1|BG238401
EST:     GGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATG                         TTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAAT
genomic: GGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtaata ... tttgctgcagTTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatatatatcaaggagtatgtggattattgtgattattttctttttgctgcagTTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATAT
                                   ttattttctttttgct  CT-rich tract
                         attattgtgattattt  TA-rich tract