Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgatatcaattctttttcatcaaaattcccttcacctttgaatctctcgatactcattctgtttttcttcttccatttgatttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG

Basic information

species Glycine max
transcript GLYMA17G00250.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286015|gb|BI469906.1|BI469906
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|151409763|gb|EV279571.1|EV279571
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|192326423|gb|FK015925.1|FK015925
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|298194297|gb|HO040945.1|HO040945
EST:     GAAGAAGGTCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCC
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCC
EST: gi|298166707|gb|HO010146.1|HO010146
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATCTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|58022692|gb|CX709433.1|CX709433
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|4396313|gb|AI495310.1|AI495310
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|254326666|gb|GR832818.1|GR832818
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|298178229|gb|HO023964.1|HO023964
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGACCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|7795909|gb|AW781306.1|AW781306
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
EST: gi|298184274|gb|HO029487.1|HO029487
EST:     GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGG                         GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG
genomic: GAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGgtttgtgata ... tttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgaatctctcgatactcattctgtttttcttcttccatttgatttgccacagGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG
                                       atttgat  putative branch site (score: 5)
                     ttctgtttttcttctt  CT-rich tract
                                       atttgattt  TA-rich tract