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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgatgtgcaaaggttttctcattcattaattcctttgtttggattcatgaatgtgaataatttcattttttcttttgttgtaactttcttgtccattgaacatttgtgttaatttgcagCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTTCAGCCTATCCACATATCTTCTCTGGACTTGTCAA

Basic information

species Glycine max
transcript GLYMA16G34350.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 3
gtaatgatgtgcaaaggttttctcattcattaattcctttgtttggattcatga--atgtgaataatttcattttttcttttgttgtaactttcttgtccattgaacatttgtgttaatttgcagCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTTCAGCCTATCCACATATCTTCTCTGGACTTGTCAA
                      |  ||  | |  |   | || ||  ||   ||  || || | | | | |     | ||    ||| | ||| ||            |||| | |  | |||||||||||||||| ||||||||||| || |||||||| ||  |||| ||||| || |||||||| || |||||| |||| || |||||  |||| |||||||
---------------------gttgtttgtgatgtttctcgtctgtgttttggattatttggagattattaggcgattttggaatgttaatttgtt----------tgtttg-gatgctatgcagCTTGATAGAGTTTCTAGCATTGCTGCCAAGTACATAGGGCGGCCGATTTCACAGCTCCCACCAGTACAGCCTGTCCATATTTCTTCATTGGATTTGTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttcttttgttgtaactttcttgtccattgaacatttgtgttaatttgcagCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTTCAGCCTATCCACATATCTTCTCTGGACTTGTCAA
                                     atttgtgttaattt  TA-rich tract