1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggcctgctagatctaaaatggaaattatggcttctatgctgcacttgttgcttcttcctgtattgtttggttacatttatttgttctgccttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGATATAAACTCACGAATTGGGAGTTGCATGCCATTGTCTGCAATGCGCAT
species | Glycine max |
transcript | GLYMA16G33160.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGEST: gi|16105719|gb|BI893459.1|BI893459
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGEST: gi|209697598|gb|BW663851.1|BW663851
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCGTTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGGTGTATTCTGEST: gi|209704046|gb|BW673646.1|BW673646
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCGTTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGGTGTATTCTGEST: gi|213615364|gb|DB965478.1|DB965478
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCGTTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGGTGTATTCTGEST: gi|19347239|gb|BM892119.1|BM892119
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGEST: gi|151410328|gb|EV280143.1|EV280143
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGEST: gi|298187824|gb|HO031781.1|HO031781
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCGTTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGEST: gi|151412485|gb|EV282297.1|EV282297
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGEST: gi|192323171|gb|FK018942.1|FK018942
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGEST: gi|18710356|gb|BM522494.1|BM522494
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
EST: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCG AGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
genomic: TTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGgtacattaat ... cttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTG
ttgttgcttcttcctgtattgtttggttacatttatttgttctgccttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGATATAAACTCACGAATTGGGAGTTGCATGCCATTGTCTGCAATGCGCAT
tttgttctgccttttc CT-rich tract
ttacatttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcctgctagatctaaaatggaaattatggcttctatgctgcacttgttgcttcttcctgtattgtttggttacatttatttgttctgccttttcacagAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGATATAAACTCACGAATTGGGAGTTGCATGCCATTGTCTGCAATGCGCAT
-ggcctgc
- - - - - - - - - - - - - - tggcttc
- - - - - - - - - - - - - - - - - - atgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttctgc