1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcctttaacattgttgtgattgatttgcgttcatttgaattcatattctcatggtttctaatatttgtgtatatactgaaacattgtgttcttaaccagGTATAGCATATTTACATGCATACAAAGCAAACAAACCAGCTCTTGTTCACCAAAGCATCTCAGCTGAGAAAGTGCTCATTGATCAGCGGTACAACCCATT
species | Glycine max |
transcript | GLYMA16G33010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAAAGGGATTGCTAAAG GTATAGCATATTTACATGCATACAAAGCAAACAAACCAGCTCTTGTTCACCEST: gi|298194833|gb|HO043305.1|HO043305
genomic: GTGAAAGGGATTGCTAAAGgttactcttc ... tcttaaccagGTATAGCATATTTACATGCATACAAAGCAAACAAACCAGCTCTTGTTCACC
EST: AGTCCTTGAATGGTCAACAAGAGTTTCTATTGTGAAAGGGATTGCTAAAG GTATAGCATATTTACATGCATACAAAGCAAACAAACCAGCTCTTGTTCACC
genomic: AGTCCTTGAATGGTCAACAAGAGTTTCTATTGTGAAAGGGATTGCTAAAGgttactcttc ... tcttaaccagGTATAGCATATTTACATGCATACAAAGCAAACAAACCAGCTCTTGTTCACC
attctcatggtttctaatatttgtgtatatactgaaacattgtgttcttaaccagGTATAGCATATTTACATGCATACAAAGCAAACAAACCAGCTCTTGTTCACCAAAGCATCTCAGCTGAGAAAGTGCTCATTGATCAGCGGTACAACCCATT
ttctaat putative branch site (score: 2)
tgttctt putative PPT
tttctaatatttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctttaacattgttgtgattgatttgcgttcatttgaattcatattctcatggtttctaatatttgtgtatatactgaaacattgtgttcttaaccagGTATAGCATATTTACATGCATACAAAGCAAACAAACCAGCTCTTGTTCACCAAAGCATCTCAGCTGAGAAAGTGCTCATTGATCAGCGGTACAACCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - tgttgtg
- - - - - - - - - - - - - tgcgttc
- - - - - - - - - - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgt