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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatatatggttaatcctctcaagaattttaaatttgttcttatcacttattctttcccatgtccttgatattgtttgaatttcaactttgttgccttcaacagAACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGGTCCTCCAATATGGGTGAAAG

Basic information

species Glycine max
transcript GLYMA16G32650.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208202156|gb|GD998311.1|GD998311
EST:     TATACTCACGAGATGTCTCCATCAATTCAGGACTATGGTTCCAGGGAGAG                         AACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGG
genomic: TATACTCACGAGATGTCTCCATCAATTCAGGACTATGTTTCCAGGGAGAGgtaatatata ... ccttcaacagAACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGG
EST: gi|15286710|gb|BI470601.1|BI470601
EST:     TATACTCACGAGATGTCTCCATCAATTCAGGACTATGTTTCCAGGGAGAG                         AACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGG
genomic: TATACTCACGAGATGTCTCCATCAATTCAGGACTATGTTTCCAGGGAGAGgtaatatata ... ccttcaacagAACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGG
EST: gi|208063792|gb|GD864648.1|GD864648
EST:     TCAGGACTATGTTTCCAGGGAGAG                         AACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGG
genomic: TCAGGACTATGTTTCCAGGGAGAGgtaatatata ... ccttcaacagAACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctttcccatgtccttgatattgtttgaatttcaactttgttgccttcaacagAACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGGTCCTCCAATATGGGTGAAAG
              ccttgat  putative branch site (score: 5)
                                          ttgccttc  putative PPT
                   atattgtttgaattt  TA-rich tract