1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtttggaatatctgtttgtattttatgaaatgctgctctgagacctttgatctaatcatgattttcataacattgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGTCAGCTCACCTTGCTGCTATGAGCATTGCCAAAAACTCTGGTTGCATTC
species | Glycine max |
transcript | GLYMA16G32530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGTCAGAACTTGATAAAGATAT-CTAAAGCAG GCTAGAAATATTCCATTATGGCTCCATCAGCTTGA-TGATGAGCCATGCAAEST: gi|7685312|gb|AW755960.1|AW755960
genomic: AGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAG-AATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAA
EST: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAG GCTAGAATATTTCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGEST: gi|254342487|gb|GR858649.1|GR858649
genomic: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
EST: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAG GCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGEST: gi|254339782|gb|GR857907.1|GR857907
genomic: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
EST: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAG GCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGEST: gi|15815232|gb|BI787507.1|BI787507
genomic: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
EST: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAG GCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGEST: gi|254342488|gb|GR858650.1|GR858650
genomic: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
EST: TCAGAACTTGATAAAGATAT-CTAAAGCAG GCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
genomic: TCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
aaatgctgctctgagacctttgatctaatcatgattttcataacattgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGTCAGCTCACCTTGCTGCTATGAGCATTGCCAAAAACTCTGGTTGCATTC
attttcataacattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttggaatatctgtttgtattttatgaaatgctgctctgagacctttgatctaatcatgattttcataacattgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGTCAGCTCACCTTGCTGCTATGAGCATTGCCAAAAACTCTGGTTGCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT