1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttttctttatgtcattgtttcctcttgcataaattaagagctgttcctgttcctcctagttgtaatttactaattagtgaaatgtgaaatgactttgcttctttcttatatgccatgcttacttcaagCGCTGGAACATATGAGAAAGAAGATAGAGGCATCAACCGAGAAAATTCGTGTGGCAAAGATACAGGAAGAACAGGCACGCAAG
species | Glycine max |
transcript | GLYMA16G32510.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCAAATCTTGGATTAGAGATGAAGCTTACATCTGGACCAAAGAAAGCAG CGCTGGAACATATGAGAAAGAAGATAGAGGCATCAACCGAGAAAATTCGTGEST: gi|10843916|gb|BF067270.1|BF067270
genomic: TGCAAATCTTGGATTAGAGATGAAGCTTACATCTGGACCAAAGAAAGCAGgttttcttta ... ttacttcaagCGCTGGAACATATGAGAAAGAAGATAGAGGCATCAACCGAGAAAATTCGTG
EST: TGCAAATCTTGGATTAGAGATGAAGCTTACATCTGGACCAAAGAAAGCAG CGCTGGAACATATGAGAAAGAAGATAGAGGCATCAACCGAGAAAATTCGTG
genomic: TGCAAATCTTGGATTAGAGATGAAGCTTACATCTGGACCAAAGAAAGCAGgttttcttta ... ttacttcaagCGCTGGAACATATGAGAAAGAAGATAGAGGCATCAACCGAGAAAATTCGTG
ttagtgaaatgtgaaatgactttgcttctttcttatatgccatgcttacttcaagCGCTGGAACATATGAGAAAGAAGATAGAGGCATCAACCGAGAAAATTCGTGTGGCAAAGATACAGGAAGAACAGGCACGCAAG
tgcttac putative branch site (score: 2)
cttacttc CT-rich tract
tttcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttctttatgtcattgtttcctcttgcataaattaagagctgttcctgttcctcctagttgtaatttactaattagtgaaatgtgaaatgactttgcttctttcttatatgccatgcttacttcaagCGCTGGAACATATGAGAAAGAAGATAGAGGCATCAACCGAGAAAATTCGTGTGGCAAAGATACAGGAAGAACAGGCACGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC