Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttaaatgtgtttgtgtgacacatttatatatttactgtgcatttctgtgtgcttctatgagtaccattcaaaccatattttaaatacactgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATAGATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCAC

Basic information

species Glycine max
transcript GLYMA16G32360.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32360.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0100g00300.t01 (Vitis vinifera), 3'ss of exon 4
tttaaatgtgtttgtgtgacacatttatatatttactgtgcatttctgtgtgcttctatgagtaccattcaa-accatattttaaatacactgc--tttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATAGATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCAC
                        | |||| |  |   |  |    | | | | |      | | || | || |   |  || |||| |  | |  | | |||||||| ||||||||||| ||||||||||| || | |||||||||| |  | ||||| | |||||||||||| || ||||| ||||||||||| || || |
--------------------gttctaatatttccatcttaaaaaattctattcatt-----gcatcagtaaataatctgcttcaaattcctttcaatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGGATGTGAGCTTTGATTGTGCCGGCTTTGATAAAACCATGTCAACCGCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343515|gb|CO984248.1|CO984248
EST:     CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAG                         GATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
genomic: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAGgtatttagaa ... tgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
EST: gi|17963850|gb|BM270594.1|BM270594
EST:     CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAG                         GATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
genomic: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAGgtatttagaa ... tgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
EST: gi|209697633|gb|BW663888.1|BW663888
EST:     CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAG                         GATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
genomic: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAGgtatttagaa ... tgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgtgcttctatgagtaccattcaaaccatattttaaatacactgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATAGATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCAC
                                            ctgcttt  CT-rich tract
                     attcaaaccatatttt  TA-rich tract