1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttaaatgtgtttgtgtgacacatttatatatttactgtgcatttctgtgtgcttctatgagtaccattcaaaccatattttaaatacactgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATAGATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCAC
species | Glycine max |
transcript | GLYMA16G32360.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAG GATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATAEST: gi|17963850|gb|BM270594.1|BM270594
genomic: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAGgtatttagaa ... tgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
EST: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAG GATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATAEST: gi|209697633|gb|BW663888.1|BW663888
genomic: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAGgtatttagaa ... tgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
EST: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAG GATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
genomic: CAAAATCTCTTGGTGCAGATGATATTATTAAAGTCTCAACAAACATTAAGgtatttagaa ... tgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATA
ctgtgtgcttctatgagtaccattcaaaccatattttaaatacactgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATAGATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCAC
ctgcttt CT-rich tract
attcaaaccatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaatgtgtttgtgtgacacatttatatatttactgtgcatttctgtgtgcttctatgagtaccattcaaaccatattttaaatacactgctttgcagGATGTGGCTGAAGAAGTTGTGCAGATACAGAAGGTTATGGGAGCTGGTATAGATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCAC
- - - - - - tgtgtga
- - - - - - - - - - - - - - - - -tactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaacc