1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatgtatagacttgctcacttttgtgttattagtacatctcaaattgcatttgctaataatggtagtgagacattaattttgaagGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAGTTAAGAATTCCATGCCTAGTAGCAATGGAGGCCATGCCCCAGTGCAGCCTCAAC
species | Glycine max |
transcript | GLYMA16G32280.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATGGTATAGTAGCTGATGGGGATGTCAAATTACAGAGGAAAATGCAG GTAAAAAGAGTTEST: gi|192317671|gb|FK007597.1|FK007597
genomic: TGGATGGTATAGTAGCTGATGGGGATGTCAAATTACAGAGGAAAATGCAGgtaatgtata ... aattttgaagGTAAAAAGAGTT
EST: TGGATGGTATAGTAGCTGATGGGGATGTCAAATTACAGAGGAAAATGCAG GTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAGTTAAGEST: gi|192317672|gb|FK007598.1|FK007598
genomic: TGGATGGTATAGTAGCTGATGGGGATGTCAAATTACAGAGGAAAATGCAGgtaatgtata ... aattttgaagGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAGTTAAG
EST: TGGATGGTATAGTAGCTGATGGGGATGTCAAATTACAGAGGAAAATGCAG GTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAGTTAAGEST: gi|4397500|gb|AI496497.1|AI496497
genomic: TGGATGGTATAGTAGCTGATGGGGATGTCAAATTACAGAGGAAAATGCAGgtaatgtata ... aattttgaagGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAGTTAAG
EST: TGGATGGTATAGTAGCTGATGGGGATGTCAAATTACAGAGGAAAATGCAG GTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAG
genomic: TGGATGGTATAGTAGCTGATGGGGATGTCAAATTACAGAGGAAAATGCAGgtaatgtata ... aattttgaagGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAG
tagtacatctcaaattgcatttgctaataatggtagtgagacattaattttgaagGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAGTTAAGAATTCCATGCCTAGTAGCAATGGAGGCCATGCCCCAGTGCAGCCTCAAC
acattaattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtatagacttgctcacttttgtgttattagtacatctcaaattgcatttgctaataatggtagtgagacattaattttgaagGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTGGATGTGCTGAAAGTTAAGAATTCCATGCCTAGTAGCAATGGAGGCCATGCCCCAGTGCAGCCTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG