1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccatcaactaggttaaatgacttgcacatgggtaatacttatatggtacatttaacatccatttctaagtttctaacactcttcctctgcattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTGGAATGTTACCACATGTTGATAACTTTGCTCATATTGGGGGATTCCTCA
species | Glycine max |
transcript | GLYMA16G32150.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208282603|gb|GE075941.1|GE075941
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|207844225|gb|GD815236.1|GD815236
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|207803223|gb|GD774856.1|GD774856
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208126276|gb|GD924722.1|GD924722
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|193578047|gb|FK533837.1|FK533837
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208222371|gb|GE020809.1|GE020809
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208031090|gb|GD829744.1|GD829744
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTEST: gi|207682404|gb|GD666805.1|GD666805
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|193636826|gb|FK584059.1|FK584059
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208272333|gb|GE067491.1|GE067491
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|207765742|gb|GD735987.1|GD735987
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTTCACTCTTCTGTTTATTATTGTCATCAATCTTGCCATEST: gi|192294215|gb|FG986304.1|FG986304
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTT-CACACTTCTGTTTATTATTGTCATCAATCTTGCCAT
EST: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GAGCAATGCTTTCAGAACTTATCACAAATTGGAGTATTTATACTAATAAGgtgttggttc ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
ggtacatttaacatccatttctaagtttctaacactcttcctctgcattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTGGAATGTTACCACATGTTGATAACTTTGCTCATATTGGGGGATTCCTCA
ttctaac putative branch site (score: 1)
ctcttcctctgcattt CT-rich tract
atttaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatcaactaggttaaatgacttgcacatgggtaatacttatatggtacatttaacatccatttctaagtttctaacactcttcctctgcattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTGGAATGTTACCACATGTTGATAACTTTGCTCATATTGGGGGATTCCTCA
-ccatcaa
- - - - - - - - - - -cttgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acatcca