1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatcaactatatacaattggataacaatatatatatatatatatatatataaagaaaaaggatatgattttgaaagatccttgtaataatattcttacagGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACAGGTATGTGTTCATCTTGTTCAAGCAGAGAGGAAGACAAACAGTGAGGCC
species | Glycine max |
transcript | GLYMA16G32080.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTG GAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACAEST: gi|151399896|gb|EV269767.1|EV269767
genomic: GATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGgttagtctct ... attcttacagGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACA
EST: GATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTG GAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACAEST: gi|7591414|gb|AW707147.1|AW707147
genomic: GATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGgttagtctct ... attcttacagGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACA
EST: GATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTG GAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACA
genomic: GATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGgttagtctct ... attcttacagGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACA
tatataaagaaaaaggatatgattttgaaagatccttgtaataatattcttacagGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACAGGTATGTGTTCATCTTGTTCAAGCAGAGAGGAAGACAAACAGTGAGGCC
tattctt CT-rich tract
ttgtaataatattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcaactatatacaattggataacaatatatatatatatatatatatataaagaaaaaggatatgattttgaaagatccttgtaataatattcttacagGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACAGGTATGTGTTCATCTTGTTCAAGCAGAGAGGAAGACAAACAGTGAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA