1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttctattctcaggcttgctcttttgttatagtttaaaaagacattgtatgtgtagcaacttttcttctgaaaatgactatgtattacctaatttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAATCACACGATGCATGCTGAAGCAATATGGAGTGCTCTGAATGATGTAGC
species | Glycine max |
transcript | GLYMA16G31990.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|19934517|gb|BQ079547.1|BQ079547
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|151400975|gb|EV270789.1|EV270789
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|151410315|gb|EV280130.1|EV280130
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|192328311|gb|FK020022.1|FK020022
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|151398424|gb|EV268295.1|EV268295
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|298174454|gb|HO014599.1|HO014599
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGATGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|298176240|gb|HO015645.1|HO015645
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACT GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
gtatgtgtagcaacttttcttctgaaaatgactatgtattacctaatttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAATCACACGATGCATGCTGAAGCAATATGGAGTGCTCTGAATGATGTAGC
acctaat putative branch site (score: 3)
tttttct CT-rich tract
tattacctaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctattctcaggcttgctcttttgttatagtttaaaaagacattgtatgtgtagcaacttttcttctgaaaatgactatgtattacctaatttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAATCACACGATGCATGCTGAAGCAATATGGAGTGCTCTGAATGATGTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA