1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttctattctcaggcttgctcttttgttatagtttaaaaagacattgtatgtgtagcaacttttcttctgaaaatgactatgtattacctaatttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAATCACACGATGCATGCTGAAGCAATATGGAGTGCTCTGAATGATGTAGC
species | Glycine max |
transcript | GLYMA16G31990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|298197148|gb|HO041891.1|HO041891
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|192328311|gb|FK020022.1|FK020022
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|13563106|gb|BG551326.1|BG551326
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|13480069|gb|BG509412.1|BG509412
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAEST: gi|15204601|gb|BI427369.1|BI427369
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
EST: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACA GTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
genomic: GAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGATGACAgtatgtaaag ... atttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAA
gtatgtgtagcaacttttcttctgaaaatgactatgtattacctaatttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAATCACACGATGCATGCTGAAGCAATATGGAGTGCTCTGAATGATGTAGC
acctaat putative branch site (score: 3)
tttttct CT-rich tract
tattacctaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctattctcaggcttgctcttttgttatagtttaaaaagacattgtatgtgtagcaacttttcttctgaaaatgactatgtattacctaatttttctagGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCATGTATTGATGATCAAAATCACACGATGCATGCTGAAGCAATATGGAGTGCTCTGAATGATGTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - gcttgct
- - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgta