1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaatttttccgtctggacaatatattttgtctgttaattgactcacacaataaagccacacatatagcttccttcttgacaaatgaaaattctgttccagGATTGGTTTCGAGAATCACAAGAGGGGTTCAACAAATCAGACTTGCCAAGTCAATGCACTTATAG
species | Glycine max |
transcript | GLYMA16G31230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
cacaataaagccacacatatagcttccttcttgacaaatgaaaattctgttccagGATTGGTTTCGAGAATCACAAGAGGGGTTCAACAAATCAGACTTGCCAAGTCAATGCACTTATAG
tcttgac putative branch site (score: 3)
ttctgttcc putative PPT
aaatgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttttccgtctggacaatatattttgtctgttaattgactcacacaataaagccacacatatagcttccttcttgacaaatgaaaattctgttccagGATTGGTTTCGAGAATCACAAGAGGGGTTCAACAAATCAGACTTGCCAAGTCAATGCACTTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - gtctgga
- - - - - - - - - - - - - - gtctgtt
- - - - - - - - - - - - - - - - - - - - - -cacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa