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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcaattatagaattatctcaccacaacctggccgttcttgtacttttggcttgaacgcttaaattatgtagttattagtattgccatattttgagaaactctatgattgcactgatgatcataccctggtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTC

Basic information

species Glycine max
transcript GLYMA16G29860.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016567|gb|CX703309.1|CX703309
EST:     CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|21888915|gb|BQ742128.1|BQ742128
EST:     CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|208286423|gb|GE086509.1|GE086509
EST:     ATGGAAGTGGCTGGAAATACTGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCTAGCAAAGTAGCATACCGG
genomic: ATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|9203277|gb|BE329501.1|BE329501
EST:     ATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: ATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|31466273|gb|CD408301.1|CD408301
EST:     TGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: TGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|193523744|gb|FK482203.1|FK482203
EST:     CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACTGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCTAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|193492066|gb|FK453482.1|FK453482
EST:     CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACTGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAG
genomic: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatattttgagaaactctatgattgcactgatgatcataccctggtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTC
                          cactgat  putative branch site (score: 3)
                  tatgatt  TA-rich tract