1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggttttggttaatccttgtgatgtctcagcaaccaatcaccagaaactattggatccttgcaacaccacaaactaacaaatttttaacttcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAATAATCAACGCTGTCCCTGCCATCGCTCTCCTTTCCTATGGTTTCTTTA
species | Glycine max |
transcript | GLYMA16G29790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGGGCTCATAGGGCTTTCTGGCATGCTTCGCTGTGGCACATGCATGAG TCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAEST: gi|41146249|gb|CK606460.1|CK606460
genomic: GATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAGgtatgctttc ... tcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCA
EST: GATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAG TCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAEST: gi|58024886|gb|CX711627.1|CX711627
genomic: GATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAGgtatgctttc ... tcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCA
EST: CTGTGGCACATGCATGAG TCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTA-TTGCAEST: gi|10256359|gb|BE824125.1|BE824125
genomic: CTGTGGCACATGCATGAGgtatgctttc ... tcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCA
EST: GATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAG TCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAEST: gi|31471135|gb|CD413163.1|CD413163
genomic: GATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAGgtatgctttc ... tcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCA
EST: GATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAG TCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAEST: gi|9899031|gb|BE607999.1|BE607999
genomic: GATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAGgtatgctttc ... tcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCA
EST: GGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAG TCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCA
genomic: GGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAGgtatgctttc ... tcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCA
aactattggatccttgcaacaccacaaactaacaaatttttaacttcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAATAATCAACGCTGTCCCTGCCATCGCTCTCCTTTCCTATGGTTTCTTTA
taacaaatttttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttttggttaatccttgtgatgtctcagcaaccaatcaccagaaactattggatccttgcaacaccacaaactaacaaatttttaacttcaattgcagTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAATAATCAACGCTGTCCCTGCCATCGCTCTCCTTTCCTATGGTTTCTTTA
-ggttttg
- - - - - - - - - -tgatgtc
- - - - - - - - - - - - - - - - -ccaatca
- - - - - - - - - - - - - - - - - - - - - - - -ctattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaac