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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctttgcttttgtttcaagaagcacaattaatacatgtcatgcagcatcaaggaatcaatgatttttattaacaaaattgcttgtaattatttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGGGGGACATTGATCCAGTGAGTGCAGTGTCGAAGCTACGAAAGTGTTGTCA

Basic information

species Glycine max
transcript GLYMA16G29660.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404533|gb|EV274347.1|EV274347
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|6072395|gb|AW101782.1|AW101782
EST:     AGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: AGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|120530896|gb|EH259029.1|EH259029
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|8825950|gb|BE209680.1|BE209680
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATTC-TGTTG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGAT-CGTGTTG
EST: gi|151405059|gb|EV274873.1|EV274873
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|6341369|gb|AW164193.1|AW164193
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|9984485|gb|BE658593.1|BE658593
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|10234078|gb|BE802966.1|BE802966
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|192294693|gb|FG986542.1|FG986542
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTCATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatcaaggaatcaatgatttttattaacaaaattgcttgtaattatttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGGGGGACATTGATCCAGTGAGTGCAGTGTCGAAGCTACGAAAGTGTTGTCA
                      tattaac  putative branch site (score: 1)
 ttattttt  putative PPT
 aatgatttttattaac  TA-rich tract