1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caatgattgtgtcttgactgttggaaggtaaaaatgtggatttatgtcatttttggcttggaaactgacatgagcttgatggacatattgtgttgaacagAAGAATCTTATACCATACCTATTATAGAGGAAAAGACCACAACACAGGATGCTACTCCAAAAGATGTTCAGCAACAAGATGATCTTCTAGAGAAGCCAAC
species | Glycine max |
transcript | GLYMA16G29450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTGATCAAAGAATGTGATAAGCTCATTGCAG AAGAATCTTATACCATACCTATTATAGAGGAAAAGACCACAACACAGGATGEST: gi|7145795|gb|AW507717.1|AW507717
genomic: CTTTGATCAAAGAATGTGATAAGCTCATTGCAGgtaaactcta ... tgttgaacagAAGAATCTTATACCATACCTATTATAGAGGAAAAGACCACAACACAGGATG
EST: CAACTCAAGGTTTGCTACTTTGATCAAAGAATGTGATAAGCTCATTGCAG AAGAATCTTATACCATACCTATTATAGAGGAAAAGACCACAACACAGGATG
genomic: CAACTCAAGGTTTGCTACTTTGATCAAAGAATGTGATAAGCTCATTGCAGgtaaactcta ... tgttgaacagAAGAATCTTATACCATACCTATTATAGAGGAAAAGACCACAACACAGGATG
gtcatttttggcttggaaactgacatgagcttgatggacatattgtgttgaacagAAGAATCTTATACCATACCTATTATAGAGGAAAAGACCACAACACAGGATGCTACTCCAAAAGATGTTCAGCAACAAGATGATCTTCTAGAGAAGCCAAC
acatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgattgtgtcttgactgttggaaggtaaaaatgtggatttatgtcatttttggcttggaaactgacatgagcttgatggacatattgtgttgaacagAAGAATCTTATACCATACCTATTATAGAGGAAAAGACCACAACACAGGATGCTACTCCAAAAGATGTTCAGCAACAAGATGATCTTCTAGAGAAGCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - gattgtg
- - - - - - -ttgactg
- - - - - - - - - - -tggaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg