1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatccttttcattttgatgcaatgcttaggaattttcatcttgcttttcatctatttctgagtttcattgattttagttcagttatttatattccttaacctcaccttagATATTTTCCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCGAAACAT
species | Glycine max |
transcript | GLYMA16G28620.2 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TTTATATGTTGAAGGTCTCCCTTCTGATAGCACCAGAAGGGAAGTAGCTC ATATTTTCCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAG
genomic: TTTATATGTTGAAGGTCTCCCTTCTGATAGCACCAGAAGGGAAGTAGCTCgtatcctttt ... ctcaccttagATATTTTCCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAG
ttctgagtttcattgattttagttcagttatttatattccttaacctcaccttagATATTTTCCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCGAAACAT
ttccttaac putative branch site
cctcacctt putative PPT
attgattttagttcag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttttcattttgatgcaatgcttaggaattttcatcttgcttttcatctatttctgagtttcattgattttagttcagttatttatattccttaacctcaccttagATATTTTCCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCGAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA