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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttatttgtgtttaacctaaaattattcccttcttgtttggataaaattgtatctgttattattttgactgtttctgcctttatgtgcatatacatacagGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAAGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAG

Basic information

species Glycine max
transcript GLYMA16G28350.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315003|gb|FK010373.1|FK010373
EST:     AAATTGAATACCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTTGTAAG                         GTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAA
genomic: AAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTTGTAAGgttggtactt ... atacatacagGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAA
EST: gi|6455582|gb|AW186265.1|AW186265
EST:     AATTTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTTGTAAG                         GTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAA
genomic: AA-TTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTTGTAAGgttggtactt ... atacatacagGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAA
EST: gi|213602893|gb|DB972467.1|DB972467
EST:     AAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTTGTAAG                         GTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAA
genomic: AAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTTGTAAGgttggtactt ... atacatacagGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAA
EST: gi|298192637|gb|HO033071.1|HO033071
EST:     AAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTTGTAAG                         GTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAA
genomic: AAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTTGTAAGgttggtactt ... atacatacagGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgtatctgttattattttgactgtttctgcctttatgtgcatatacatacagGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAAGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAG
                 ttttgac  putative branch site (score: 3)
 tatctgttattatttt  TA-rich tract