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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaggatgtcagttttgttgttaatgtcttaattcttaaatgttgcctctggtcatcactaactaaaatttcttttctttacatagCTACTGATGCCTGGCTTGCAAATCCGGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT

Basic information

species Glycine max
transcript GLYMA16G28290.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28290.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 3'ss of exon 2
----------gtatgtaggatgtcagttttgt-tgttaatgtcttaattcttaaatgttgcctctggtca-tcactaactaa-----aatttcttttctttacatagCTACTGATGCCTGGCTTGCAAATCCGGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT
           | | |        | || ||| | |||   |  | ||| |     ||       ||||| | | ||  | |     || |  || |  |||  |||   | ||||| ||||| || || |||||||||||||| || || || |||||||||||||| ||||| ||  |  |||||||||||||| ||  ||||||
gtgagtaccattttttctttcactaattctgtgtcttagactgctcattgtggttggtctttctgggtcagttaatagtttacgataaaatatttcttgttatgtagTATCGGATGCTTGGCTCGCGAACCCGGCCTTGCCTGAGGACATTCTGAAGGAGGCTGTACCAGGAAACATCAGGAGGGCTGAGCATTTTCTTGCTGTTTT

upper sequence: GLYMA16G28290.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 3
gtatgtaggatgtcagttttgttgttaatgtcttaattcttaa---atgttgcctctggtcatc--actaactaaa---atttcttttctttacatagCTACTGATGCCTGGCTTGCAAATCCGGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT
||| ||| |   ||||    ||  |   ||  || |||   |    |   |   | |  | ||   |  ||||  |   |    |||| |||    ||    ||||   ||||||||||| || ||  ||||| ||||||| |||||||||||||| || || |||||| | ||||||||||||||| | ||||||||
gtaagtatgtgttcaggaaggtgatctgtgatttgattgaaagcacacagtaaattttctaattctatgaacttgacgcaacaattttttttttgcagGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTAAAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTT

upper sequence: GLYMA16G28290.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtatgtaggatgtc----agt-----tttgttgttaatgtcttaa-----ttcttaaatgttgcctctggtcatcactaactaaaatttcttttctttacatagCTACTGATGCCTGGCTTGCAAATCCGGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT
||| || | ||| |    |||     ||  ||  ||| |||| ||     || || ||||     |||  | |  |  || |   |  |  ||  ||| |  || | | ||  |||||||||| ||||| || |||||||||||||| || ||||||||||| || ||||||||||| || || ||||||||  |   ||||||
gtaagtggaatgccttatagtgatggttcattaataaagtctaaaaacattttttgaatgcacaatctattgacta--aagttggacatgcttctttttcgcagTTTCAGACACCTGGCTTGCGAATCCTGCTTTGCCTGATGATATTCTGAAGGAGGCTGTGCCAGGAAATATTCGGCGAGCAGAGCATTTCTTGTCTGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttaaatgttgcctctggtcatcactaactaaaatttcttttctttacatagCTACTGATGCCTGGCTTGCAAATCCGGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT
                                     tttcttttctttacat  CT-rich tract
                            taactaaaatttcttt  TA-rich tract